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Genomic Variability of Corchorus Golden Mosaic Virus Originating from Bangladesh
Abstract
Yellow mosaic disease of jute (Corchorus capsularis) was observed on several plants in different jute growing region (Bangladesh) in April 2013. PCR assays and BLAST analysis of the DNA sequences were performed. We have cloned and sequenced eleven isolates of Corchorus golden mosaic virus (CoGMV) collected from eleven different regions in Bangladesh. DNA A sequence of CoGMV Bangladeshi (BD) isolates shared highest identity 97.3-99.1% with the Indian isolates and 93.9-94.3% with the Vietnamese isolate of CoGMV, whereas DNA B shared sequence identity 93.9-94.3% with the CoGMV isolates reported from Vietnam and India. Genetic analysis revealed that CoGMV isolates originating from Bangladesh possessed greater genetic variability than the Indian and Vietnamese isolates. This is thought to be the first report of Corchorus golden mosaic virus (CoGMV) associated with yellow mosaic disease of jute from Bangladesh
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References
Bowdoin, H. L., S. B. Settlage, B. M. Orozco, S. Nagar, D. Robertson. 2000. Geminiviruses: models for plant DNA replication, transcription, and cell cycle regulation. Critical Reviews in Biochemistry and Molecular Biology. 35(2). 105-40.
Briddon, R. W., S. E. Bull, S. Mansoor, I. Amin, P. G. Markham. 2002. Universal primers for PCR-mediated amplification of DNA-beta. Molecular Biotechnology. 20.315-8.
Bull, S. E., R. W. Briddon, P. G. Markham. 2003. Universal primers for the PCR-mediated amplification of DNA 1: A satellite-like molecule associated with begomovirus-DNA β complexes. Molecular Biotechnology. 23. 83-86.
Doyle, J. J., J. L. Doyle. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin. 19. 11-15.
Fauquet, C. M., R. W. Briddon, J. K. Brown, E. Moriones, J. Stanley, M. Zerbini, X. Zhou. 2008. Geminivirus strain demarcation and nomenclature. Archives of Virology. 153. 783-821.
Ghosh, R., P. Palit, S. K. Ghosh, A. Roy. 2011. A New World virus alters biochemical profiling of jute plants (Corchorus capsularis) upon infection. International Journal of Science and Nature. 2(4). 883-885.
Ghosh, R., S. Paul, S. Das, P. Palit, S. Acharyya, A. Das, J. I. Mir, S. K. Ghosh, A. Roy. 2008. Molecular evidence for existence of a New World begomovirus associated with yellow mosaic disease of Corchorus capsularis in India. Australasian Plant Disease Notes. 3. 59-62.
Ha, C., S. Coombs, P. Revill, R, Harding, M. Vu, J. Dale. 2008. Molecular characterization of begomoviruses and DNA satellites from Vietnam: additional evidence that the New World geminiviruses were present in the Old World prior to continental separation. Journal of General Virology. 89. 312-326.
Ha, C., S. Coombs, P. Revill, R. Harding, M. Vu, J. Dale. 2006. Corchorus yellow vein virus, a New World geminivirus from the old world. Journal of General Virology. 87. 997-1003.
Harrison, B. 1985. Advances in Geminivirus Research. Annual Review of Phytopathology. 23. 55-82.
Harrison, B. D., M. M. Swanson, D. Fargette. 2002. Begomovirus coat protein: serology, variation and functions. Physiological and Molecular Plant Pathology. 60. 257-271.
King, A. M. Q., M. J. Adams, E. B. Carstens, E. J. Lefkowitz. 2012. Family Geminiviridae. In Virus taxonomy: Ninth Report of the International Committee on Taxonomy of viruses. Elsevier, New York. 351-373.
Lazarowitz, S. G. 1992. Geminiviruses: Genome structure and gene function. Critical Reviews in Plant Sciences. 11. 327 - 349.
Martin, D. P., P. Lemey, M. Lott, V. Moulton, D. Posada, P. Lefeuvre. 2010. RDP3: a flexible and fast computer program for analyzing Recombination. Bioinformatics. 26 (19). 2462-2463.
Roberts, S., J. Stanley. 1994. Lethal mutations within the conserved stem-loop of African cassava mosaic virus DNA are rapidly corrected by genomic recombination. Journal of General Virology. 75. 3203-3209.
Rozas J., J. C. Sa´nchez-DelBarrio, X. Messeguer, R. Rozas. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics. 19. 2496-2497.
Tamura K., G. Stecher, D. Peterson, A. Filipski, S. Kumar. 2013. MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular Biology and Evolution 30. 2725-2729.
Thompson, J. D., D. G. Higgins, T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research. 22. 4673-4680.
Samanta P., S. Sadhukhan, S. Das, A. Joshi, S. K. Sen, A. Basu. 2011. Isolation of RNA from field-grown jute (Corchorus capsularis) plant in different developmental stages for effective downstream molecular analysis. Molecular Biotechnology. 49.109-115.
Yang, Y., K. S. Kim, E. J. Anderson. 1997. Seed transmission of cucumber mosaic virus in spinach. Phytopathology. 87. 924-931.
DOI: 10.33687/phytopath.003.02.0766
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Copyright (c) 2014 Md. Moniruzzaman Hasan, Yoshitaka Sano
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