Mitigation of junglerice (Echinochloa colona) allelopathic stress in rice (Oryza sativa L.) by Bacillus subtilis
Abstract
Rice (Oryza sativa L.) is one of the world’s major staple crops due to its nutritional value and associated physiological and health benefits. However, rice production faces a serious threat from Echinochloa colona (junglerice), an aggressive and difficult-to-control weed. E. colona releases allelochemicals into the environment that suppress rice seed germination and seedling growth. In this study, we investigated the potential role of the beneficial bacterium Bacillus subtilis in alleviating allelopathic stress. As a plant growth-promoting rhizobacterium, B. subtilis enhances plant health by producing biologically active compounds and improving nutrient uptake. In vitro bioassays were conducted to evaluate the allelopathic effects of aqueous extracts prepared from different parts of E. colona (inflorescences, shoots, and roots) on rice. Extract concentrations ranging from 0.2% to 3.0% significantly inhibited seed germination, seedling biomass, and root and shoot lengths compared with the control. Application of B. subtilis significantly mitigated these adverse effects, improving seed germination by up to 73%, root length by 34.56%, shoot length by 20%, fresh biomass by 27.9%, and dry biomass by 6.8% relative to untreated stressed plants. Enhanced biomass production and seedling growth following B. subtilis application were further illustrated by heatmap analysis. A concentration range of 1.0% to 1.8% of B. subtilis was most effective in promoting overall seedling growth and reducing the negative effects of weed-induced allelopathic stress. These findings demonstrate that B. subtilis is a promising biocontrol agent for mitigating allelopathic interference from E. colona, thereby improving the growth and development of rice seedlings.
Keywords
Full Text:
PDFReferences
Akinsemolu, A.A., Onyeaka, H., Odion, S., Adebanjo, I., 2024. Exploring Bacillus subtilis: Ecology, biotechnological applications, and future prospects. Journal of Basic Microbiology 64(6), 2300614.
Azeem, W., Mukhtar, T., Haq, M.I., Khan, M.A., Ibrahim, M.S., Hassan, A., Regmi, H., Duncan, L.W., 2025. The nematicidal potential of Moringa oleifera extracts and rhizobacteria against Meloidogyne incognita in tomato. Frontiers in Plant Science 16, 1562074. https://doi.org/10.3389/fpls.2025.1562074
Batool, M., Raja, M.U., Mukhtar, T., Hassan, M.U., Ahsan, R., Ullah, S., Zakria, M., 2026. Phenotypic and molecular assessment of bacterial blight resistance genes in elite rice germplasm of Pakistan. Archives of Phytopathology and Plant Protection, 1-13. https://doi.org/10.1080/03235408.2026.2627616
Calabrese, E.J., Mattson, M.P., 2017. Hormesis provides a generalized quantitative estimate of biological plasticity. Journal of Cell Communication and Signaling 11(1), 91-92.
Chaudhari, P.R., Tamrakar, N., Singh, L., Tandon, A., Sharma, D., 2018. Rice nutritional and medicinal properties: A. Journal of Pharmacognosy and Phytochemistry 7(2), 150-156.
Chauhan, B.S., Johnson, D.E., 2011. Ecological studies on Echinochloa crus-galli and the implications for weed management in direct-seeded rice. Crop Protection 30(11), 1385-1391.
Glick, B.R., 2012. Plant growth-promoting bacteria: mechanisms and applications. Scientifica 2012, 963401.
Glick, B.R., 2014. Bacteria with ACC deaminase can promote plant growth and help to feed the world. Microbiological Research 169(1), 30-39.
Iqbal, S., Begum, F., Manishimwe, C., Rabaan, A.A., Sabour, A.A., Alshiekheid, M.A., Shaw, P., 2025. Allelochemicals degradation and multifarious plant growth promoting potential of two Bacillus spp.: Insights into genomic potential and abiotic stress alleviation. Chemosphere 373, 144191.
Kang, S.M., Khan, A.L., Waqas, M., You, Y.H., Kim, J.H., Kim, J.G., Hamayun, M., Lee, I.J., 2014. Plant growth-promoting rhizobacteria reduce adverse effects of salinity and osmotic stress by regulating phytohormones and antioxidants in Cucumis sativus. Journal of Plant Interactions 9(1), 673-682.
Kaur, H., Kaur, J., Gera, R., 2020. Plant growth promoting rhizobacteria: a review of their mechanisms and applications. Journal of Critical Reviews 7(9), 1-8.
Kumar, A., Patel, J.S., Meena, V.S., Ramteke, P.W., 2019. Plant growth-promoting rhizobacteria: strategies to improve abiotic stresses under sustainable agriculture. Journal of Plant Nutrition, 42(11-12), 1402-1415.
Kumar, A., Singh, S., Mukherjee, A., Rastogi, R.P., Verma, J.P., 2021. Plant growth-promoting rhizobacteria (PGPR): a potential alternative tool for sustainable agriculture. Food and Energy Security 10(2), e292.
Kumar, S., Anjali, Arutselvan, R., Masurkar, P., Singh, U.B., Tripathi, R., Bhupenchandra, I., Minkina, T., Keswani, C., 2024a. Bacillus subtilis-mediated induction of disease resistance and promotion of plant growth of vegetable crops. In: Applications of Bacillus and Bacillus Derived Genera in Agriculture, Biotechnology and Beyond. Springer Nature Singapore, Singapore, pp. 165-211.
Kumar, S., Diksha, Sindhu, S.S., Kumar, R., 2024b. Biofertilizers: An eco-friendly technology for nutrient recycling and environmental sustainability. Current Research in Microbial Sciences 5, 100204.
Mahajan, G., Chauhan, B.S., 2023a. Germination Pattern and Seed Longevity of Echinochloa colona (L.) Link in Eastern Australia. Agronomy 13(8), 2044.
Mahajan, G., Chauhan, B.S., 2023b. The biology and management of Echinochloa colona. Weed Research 63(1), 2-11.
Samal, P., Babu, S.C., Mondal, B., Mishra, S.N., 2022. The global rice agriculture towards 2050: An inter-continental perspective. Outlook on Agriculture 51(2), 164-172.
Sethi, G., Behera, K.K., Sayyed, R., Adarsh, V., Sipra, B.S., Singh, L., Alamro, A.A., Behera, M., 2025. Enhancing soil health and crop productivity: the role of zinc-solubilizing bacteria in sustainable agriculture. Plant Growth Regulation 105(3), 601-617.
Singh, P., Devi, B., Yadav, N., 2024. PGPR-Mediated Defense Priming: A Sustainable Paradigm for Combating Biotic and Abiotic Stresses in Agriculture. Journal of Microbiology and Biotechnology 9(2), 1-9.
Trang, N.T.T., Cuong, N.T., Van Vang, L., Le Thi, H., 2024. Evaluation of phytotoxic potential in Asteraceae plant extracts for biological control of Echinochloa crus‐galli and Echinochloa colona. Plant‐Environment Interactions 5(5), e70009.
Vejan, P., Abdullah, R., Khadiran, T., Ismail, S., Nasrulhaq Boyce, A., 2016. Role of plant growth promoting rhizobacteria in agricultural sustainability-a review. Molecules 21(5), 573.
Yang, J., Kloepper, J.W., Ryu, C.M., 2009. Rhizosphere bacteria help plants tolerate abiotic stress. Trends in Plant Science 14(1), 1-4.
Zia, A., Azam, U., Mehmood, R.T., Haider, A., Shahzadi, N., Huda, N.U., Ambreen, U., Akhter, A., Hafeez, A., Majid, S.M., 2024. Plant growth promoting Rhizobacteria: A novel approach towards sustainable agriculture. Cornous Biology 2, 16-28.
DOI: https://doi.org/10.33804/10.33804/pp.010.01.5988
Refbacks
- There are currently no refbacks.




