A Deep Learning based Phyto-pathological Detection for Early Diagnosis of Tomato Leaf Diseases

Fariha Ashraf, Fahima Tahir, Rabia Javed, Wajeeha Malik, Khansa Aatif

Abstract


Tomato (Lycopersicon esculentum Mill) is a frequently grown vegetable in various regions of the world. Tomatoes are one of the most demanded vegetables and a source of revenue for third-world countries. Tomato plant diseases can significantly reduce tomato production and impact a nation’s economic development. Timely and reliable detection of tomato leaf diseases can increase tomato production, ensure food security, and sustain agricultural activities. A Convolutional Neural Network (CNN) model was employed in this study to detect and classify Fungal, Bacterial, and Viral diseases in nine types of tomato leaves. High-resolution images of plant leaves damaged by pathogens were used for training and testing the CNN model. The dataset used in Experiment 1 consisted of nine different tomato leaf classes, including one healthy leaf class and eight pathogen-affected classes. The dataset used for Experiment 2 was categorized into three classes based on the pathogens: bacteria, fungi, and viruses. Experiment 1 achieved an accuracy of 93%, and Experiment 2 achieved 96% accuracy in detecting tomato leaf diseases. The results demonstrate that the deep learning-based Convolutional Neural Network (CNN) model is an advanced and effective solution for the identification of plant leaf diseases. This research will support better crop planning and help increase overall tomato production.


Keywords


Tomato crop; Plant pathology; Deep learning; Conventional neural network (CNN); Plant disease detection; Automatic detection; Plant-pathology; Tomato leaf disease

References


Aatif, K., Fahiem, M. A., & Tahir, F. (2024). Forecasting Floods Using Deep Learning Models: A Longitudinal Case Study of Chenab River, Pakistan. IEEE Access, 12, 115802–115819. https://doi.org/10.1109/ACCESS.2024.3445586

Abdulridha, J., Ehsani, R., Abd-Elrahman, A., & Ampatzidis, Y. (2019). A remote sensing technique for detecting laurel wilt disease in avocado in presence of other biotic and abiotic stresses. Computers and Electronics in Agriculture, 156, 549–557. https://doi.org/10.1016/J.COMPAG.2018.12.018

Ali, H., Lali, M. I., Nawaz, M. Z., Sharif, M., & Saleem, B. A. (2017). Symptom based automated detection of citrus diseases using color histogram and textural descriptors. Computers and Electronics in Agriculture, 138, 92–104. https://doi.org/10.1016/J.COMPAG.2017.04.008

Ally, N. M., Neetoo, H., Ranghoo-Sanmukhiya, V. M., & Coutinho, T. A. (2023). Greenhouse-Grown Tomatoes: Microbial Diseases and their Control Methods: A Review. International Journal of Phytopathology, 12(1), 99–127. https://doi.org/10.33687/phytopath.012.01.4273

Arya, S., & Singh, R. (2019). A Comparative Study of CNN and AlexNet for Detection of Disease in Potato and Mango leaf. IEEE International Conference on Issues and Challenges in Intelligent Computing Techniques, ICICT 2019. https://doi.org/10.1109/ICICT46931.2019.8977648

Ashqar, B. A. M., & Abu-Naser, S. S. (2019). Identifying Images of Invasive Hydrangea Using Pre-Trained Deep Convolutional Neural Networks. International Journal of Control and Automation, 12(4), 15–28. https://doi.org/10.33832/IJCA.2019.12.4.02

Caruso, A. G., Bertacca, S., Parrella, G., Rizzo, R., Davino, S., & Panno, S. (2022). Tomato brown rugose fruit virus: A pathogen that is changing the tomato production worldwide. Annals of Applied Biology, 181(3), 258–274. https://doi.org/10.1111/AAB.12788;WGROUP:STRING:PUBLICATION

Dhingra, G., Kumar, V., & Dutt Joshi, H. (2019). A novel computer vision based neutrosophic approach for leaf disease identification and classification. https://doi.org/10.1016/j.measurement.2018.12.027

Fuentes, A., Yoon, S., Kim, S. C., & Park, D. S. (2017). A Robust Deep-Learning-Based Detector for Real-Time Tomato Plant Diseases and Pests Recognition. Sensors 2017, Vol. 17, Page 2022, 17(9), 2022. https://doi.org/10.3390/S17092022

Hassanien, A. E., Gaber, T., Mokhtar, U., & Hefny, H. (2017). An improved moth flame optimization algorithm based on rough sets for tomato diseases detection. Computers and Electronics in Agriculture, 136, 86–96. https://doi.org/10.1016/J.COMPAG.2017.02.026

Hughes, D. P., & Salathé, M. (n.d.). An open access repository of images on plant health to enable the development of mobile disease diagnostics. Retrieved September 25, 2025, from http://www.fao.org/fileadmin/templates/wsfs/docs/expert_paper/How_to_Feed_the_World_in_2050.pdf!!!

Jayswal, H. S., & Chaudhari, J. P. (2023). Plant Leaf Diseases Detection and Classification Using Spectroscopy. Smart Innovation, Systems and Technologies, 324, 473–483. https://doi.org/10.1007/978-981-19-7447-2_42

K., B., & Rao, M. (1 C.E.). Tomato Plant Leaves Disease Classification Using KNN and PNN. Https://Services.Igi-Global.Com/Resolvedoi/Resolve.Aspx?Doi=10.4018/IJCVIP.2019010104, 9(1), 51–63. https://doi.org/10.4018/IJCVIP.2019010104

Khakimov, A., Salakhutdinov, I., Omolikov, A., & Utaganov, S. (2022). Traditional and current-prospective methods of agricultural plant diseases detection: A review. IOP Conference Series: Earth and Environmental Science, 951(1), 012002. https://doi.org/10.1088/1755-1315/951/1/012002

Khan, M., Gulan, F., Arshad, M., Zaman, A., & Riaz, A. (2024). Early and late blight disease identification in tomato plants using a neural network-based model to augmenting agricultural productivity. Science Progress, 107(3). https://doi.org/10.1177/00368504241275371

Khan, R., Ud Din, N., Zaman, A., & Huang, B. (2024). Automated Tomato Leaf Disease Detection Using Image Processing: An SVM-Based Approach with GLCM and SIFT Features. Journal of Engineering, 2024(1), 9918296. https://doi.org/10.1155/2024/9918296

Kwabena, P. M., Weyori, B. A., & Mighty, A. A. (2020). Gabor Capsule Network for Plant Disease Detection. International Journal of Advanced Computer Science and Applications, 11(10), 388–395. https://doi.org/10.14569/IJACSA.2020.0111048

Leach, J. E., Leung, H., & Tisserat, N. A. (2014). Plant Disease and Resistance. Encyclopedia of Agriculture and Food Systems, 360–374. https://doi.org/10.1016/B978-0-444-52512-3.00165-0

Liu, B., Zhang, Y., He, D. J., & Li, Y. (2017). Identification of Apple Leaf Diseases Based on Deep Convolutional Neural Networks. Symmetry 2018, Vol. 10, Page 11, 10(1), 11. https://doi.org/10.3390/SYM10010011

Liu, G., Nouaze, J. C., Mbouembe, P. L. T., & Kim, J. H. (2020). YOLO-tomato: A robust algorithm for tomato detection based on YOLOv3. Sensors (Switzerland), 20(7). https://doi.org/10.3390/S20072145,

PlantVillage Dataset. (n.d.). Retrieved September 25, 2025, from https://www.kaggle.com/datasets/abdallahalidev/plantvillage-dataset/data

Qasim, M., Farooq, W., & Akhtar, W. (2018). Policy and Institutional Reforms to Improve Horticultural Markets in Pakistan (ADP/2014/043) Preliminary Report on the Survey of Tomato Growers in Sindh, Punjab and Balochistan.

Ribeiro, H. V., Lopes, D. D., Pessa, A. A. B., Martins, A. F., da Cunha, B. R., Gonçalves, S., Lenzi, E. K., Hanley, Q. S., & Perc, M. (2023). Deep learning criminal networks. Chaos, Solitons & Fractals, 172, 113579. https://doi.org/10.1016/J.CHAOS.2023.113579

Ronihal, S. S., Selvam, S., & Kusuma, P. (2025). Enhancing Crop Yield: A Deep Learning Approach to Detect Tomato Leaf Diseases. Proceedings of the 3rd International Conference on Intelligent and Innovative Technologies in Computing, Electrical and Electronics, IITCEE 2025. https://doi.org/10.1109/IITCEE64140.2025.10915243

Sattar, S., Iqbal, A., Parveen, A., Fatima, E., Samdani, A., Fatima, H., Iqbal, M. S., & Wajid, M. (2024). Tomatoes Unveiled: A Comprehensive Exploration from Cultivation to Culinary and Nutritional Significance. Qeios. https://doi.org/10.32388/CP4Z4W.2

Sibiya, M., & Sumbwanyambe, M. (2019). A Computational Procedure for the Recognition and Classification of Maize Leaf Diseases Out of Healthy Leaves Using Convolutional Neural Networks. AgriEngineering 2019, Vol. 1, Pages 119-131, 1(1), 119–131. https://doi.org/10.3390/AGRIENGINEERING1010009

Singh, A. K., Ganapathysubramanian, B., Sarkar, S., & Singh, A. (2018). Deep Learning for Plant Stress Phenotyping: Trends and Future Perspectives. Trends in Plant Science, 23(10), 883–898. https://doi.org/10.1016/J.TPLANTS.2018.07.004,

Singh, V. K., Singh, A. K., Singh, P. P., & Kumar, A. (2018). Interaction of plant growth promoting bacteria with tomato under abiotic stress: A review. Agriculture, Ecosystems & Environment, 267, 129–140. https://doi.org/10.1016/J.AGEE.2018.08.020

Sun, Y., Liu, Y., Wang, G., & Zhang, H. (2017). Deep Learning for Plant Identification in Natural Environment. Computational Intelligence and Neuroscience, 2017(1), 7361042. https://doi.org/10.1155/2017/7361042

Tang, Z., He, X., Zhou, G., Chen, A., Wang, Y., Li, L., & Hu, Y. (2023). A Precise Image-Based Tomato Leaf Disease Detection Approach Using PLPNet. Plant Phenomics, 5. https://doi.org/10.34133/PLANTPHENOMICS.0042/SUPPL_FILE/PLANTPHENOMICS.0042.F1.DOCX

Tm, P., Pranathi, A., Saiashritha, K., Chittaragi, N. B., & Koolagudi, S. G. (2018). Tomato Leaf Disease Detection Using Convolutional Neural Networks. 2018 11th International Conference on Contemporary Computing, IC3 2018. https://doi.org/10.1109/IC3.2018.8530532

Wang, C., Li, M., Duan, X., Abu-Izneid, T., Rauf, A., Khan, Z., Mitra, S., Emran, T. Bin, Aljohani, A. S. M., Alhumaydhi, F. A., Thiruvengadam, M., & Suleria, H. A. R. (2023). Phytochemical and Nutritional Profiling of Tomatoes; Impact of Processing on Bioavailability - A Comprehensive Review. Food Reviews International, 39(8), 5986–6010. https://doi.org/10.1080/87559129.2022.2097692

Wang, G., Sun, Y., & Wang, J. (2017). Automatic Image-Based Plant Disease Severity Estimation Using Deep Learning. Computational Intelligence and Neuroscience, 2017. https://doi.org/10.1155/2017/2917536,


Full Text: PDF

DOI: 10.33687/phytopath.014.02.5885

Refbacks

  • There are currently no refbacks.




Copyright (c) 2025 Rabia Javed

Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 International License.