EVALUATION OF GENETIC DIVERSITY AMONG EDIBLE BANANA VARIETIES FOUND IN MIZORAM, INDIA USING RANDOMLY AMPLIFIED POLYMORPHIC DNA

Thangjam Premabati, Lalremsiami Hrahsel, Pachuau Lalrinfela, Robert Thangjam

Abstract


Genetic variations in the edible non-seeded banana cultivars found in Mizoram, India was studied using RAPD markers. A total of seven edible cultivars belonging to different genome groups were analyzed using six standardized UBC-primers. Out of six primers used, two primers namely UBC 416 and 450 generates 100% polymorphism. The average polymorphism per primer was 92.7%. The polymorphism information content (PIC) of the primers in used ranged from 0.58 to 0.89. The resolving power of primer, UBC-418 was the highest (9.4) while that of primer UBC-419 was the lowest (3.7). The dendrogram analysis revealed the grouping of the cultivars into two major groups. The first group was constituted by all the six hybrid cultivars of A and B genomes while the second group was represented by the lone triploid AAA genome sample. The result of the principal co-ordinate analysis also supported the dendrogram grouping of the samples studied. Thus, the use of RAPD technique for the study of genetic variations in the banana cultivars was demonstrated. It was also shown that significant amount of genetic diversity existed in the samples studied, thereby providing clear genetic information for future breeding and conservation strategies.

Keywords


Edible banana, Mizoram, RAPD, genetic variation

Full Text:

PDF

References


Andersson, J.A., G.A. Churchill, J.E. Autrique, S.D. Tanksley and M.E. Sorrells. 1993. Optimizing parental selection for genetic-linkage maps. Genome. 36(1): 181-186.

Ashalatha, C.H., T. Teo, T. Schwarzacher and H.H. Pat. 2005. Genome classification of banana cultivars from South India using IRAP markers. Euphytica. 144: 285-290.

Bhat, K.V., R.L. Jarret and R.S. Rana. 1995. DNA profiling of banana and plantain cultivars using random amplified polymorphic DNA (RAPD) and restriction fragment length polymorphism (RFLP) markers. Electrophoresis. 16: 1736-1745.

Cheesman, E.E. 1947. Classification of the bananas. II. The genus Musa L. Kew Bulletin. 2: 106-117.

Cipriani G., R. Bella and R. Testolin. 1996. Screening RAPD primer for molecular taxonomy and cultivar fingerprinting in genus Actinidia. Euphytica. 90: 169-174.

Daniells, J.W., C. Jenny, D.A. Karamura, K. Tomekpe, E.Arnaud and S. Sharrock. 2001. Musalogue: A catalogue of Musa germplasm. Diversity in the genus Musa. INIBAP Montpellier, France.

Dolezel, J. and J. Bartos. 2005. Plant DNA flow cytometry and estimation of nuclear genome size. Ann. Bot. 95: 99–110.

Heslop-Harrison J.S. and T. Schwarzacher. 2007. Domestication, genomics and the future for banana. Ann. Bot. 100(5): 1073-1084.

Milbourne, D., R. Meyer, J.E. Bradshaw, E. Baird, N. Bonar, J. Provan, W. Powell and R. Waugh. 1997. Comparison of PCR-based marker systems for the analysis of genetic relationships in cultivated potato. Mol. Breeding. 3(2): 127-136.

Molina, A.B. and C. Kudagamage (eds.). 2002. Report of the South Asia Network on Plant Genetic Resources (SANPGR) meeting held on December 9-11, 2001 at Plant Genetic Resources Center (PGRC), Peradeniya, Sri Lanka, INIBAP-BAPNET, Los Baños (PHL), p. 7.

Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics. 89: 583-590.

Onguso, J.M., E.M. Kahangi, D.W. Ndiritu and F. Mizutani. 2004. Genetic characterization of cultivated banana and plantain in Kenya by RAPD markers. Sci. Hortic. 99: 9-20.

Pollefeys, P., S. Sharrock and E. Arnaud. 2004. Preliminary analysis of the literature on the distribution of wild Musa species using MGIS and DIVA-GIS. INIBAP. Montpellier, France. http://bananas.bioversityinternational.org/files/files/pdf/publications/wildspecies_pollefeys.pdf. Accessed July 2007.

Prevost, A. and M.J. Wilkinson. 1999. A new system of comparing PCR primers applied to ISSR fingerprinting of potato cultivars. Theor. Appl. Genet. 98(1): 107-112.

Rohlf, F.J. 2000. NTSYS-pc version 2.1 Numerical Taxonomy and Multivariate Analysis system. Exeter Software, New York.

Sathiamoorthy, S., S.Uma and R. Selvarajan. 2001. Banana research and development programme in India and highlights of NRCB-INBAP collaborative projects. Advancing banana and plantain R & D in Asia and Pacific. Vol. 10: Molina, A.B. and V.N. Rao and M.A.G. Maghuyop (eds.). Proceedings of the 10th INIBAP-ASPNET Regional Advisory Committee meeting. Bangkok (THA), 2000/11/10-11 INIBAP-ASPNET, Los Baños (PHL).

Seyit, A.K., E.H. Erdogan and P. Emine. 2010. Comparison of effectiveness of ISSR and RAPD markers in genetic characterization of seized marijuana (Cannabis sativa L.) in Turkey. African J. Agric. Res. 5(21): 2925- 293.

Simmonds, N.W. and S.T.C. Weatherup. 1990. Numerical taxonomy of the wild bananas (Musa). New Phytol. 115: 567-571.

Simmonds, N.W. 1962. Evolution of the bananas. Green & Co. Longmans, London.

Taxonomic Advisory Group for Musa. 2007. Launching the Taxonomic Advisory Group: developing a strategic approach to the conservation and use of Musa diversity. INIBAP. Montpellier, France.

Thangjam, R., M. Damayanti and G.S. Jitendra. 2003. A simple and rapid method for isolation of DNA from imbibed embryos of Parkia timoriana (DC.) Merr. for PCR analysis. J. Food Agric. Environ. 1: 36-38.

Uma, S. and S. Sathiamoorthy. 2002. Names and synonyms of bananas and plantains of India, National Research Centre for Banana (ICAR), Tiruchirapalli, India.

Uma, S., A. Siva, M.S. Saraswathi, P.Durai, T.V.R. Sharma, D.B. Singh, R. Selvarajan and S. Sathiamoorthy. 2005. Studies on the origin and diversification of Indian wild banana (Musa balbisiana) using arbitrarily amplified DNA markers. J. Hortic. Sc. Biotech. 80: 575-580.

Wong, C., R. Kiew, G. Argent, O.Set, S.K. Lee and T.Y. Gon. 2002. Assessment of validity in the sections in Musa (Musaceae) using AFLP. Ann. Bot. 90: 231-238.


Refbacks

  • There are currently no refbacks.




Copyright (c) 2013 Thangjam Premabati, Lalremsiami Hrahsel, Pachuau Lalrinfela, Robert Thangjam

Creative Commons License
This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.

Journal of Plant Breeding and Genetics
ISSN: 2305-297X (Online), 2308-121X (Print)
© EScience Press. All Rights Reserved.